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Using Hardware Accelerators to Speed Up Protein and DNA Alignment

Summary

New research has shown that the application of hardware accelerators, originally developed for artificial intelligence, can successfully be used to speed up the process of aligning proteins and DNA molecules. This hardware accelerator, known as Intelligent Processing Units (IPUs), allows […]

Hardverski akcelerator ubrzava poravnanje proteina i DNK

New research has shown that the application of hardware accelerators, originally developed for artificial intelligence, can successfully be used to speed up the process of aligning proteins and DNA molecules. This hardware accelerator, known as Intelligent Processing Units (IPUs), allows protein and DNA alignment to be up to 10 times faster than previous methods.

Alignment of DNA and protein sequences is a complex problem faced by biologists when assembling genomes. When genetic material is sequenced, thousands or even millions of short DNA sequences are obtained that need to be pieced together. Using an algorithm to identify pairs of overlapping sequences, these sequences are connected to assemble the genome.

A hardware accelerator enables faster data transfer and provides additional memory for data manipulation. The combination of these features allows for the acceleration of the process of aligning protein and DNA sequences. Scientists have discovered that this hardware accelerator is even faster than the most advanced methods currently available, opening up new possibilities for accelerated genome assembly and identification of similarities among different organisms.

This technological advancement has important implications for computational biology. Accelerating the process of sequence alignment allows scientists to analyze genomic data faster and more efficiently. This can lead to faster discovery of new knowledge and solutions to biological problems.

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